publications

+ denotes co-first authorship | * denotes corresponding authorship

2025

  1. Transcriptional regulatory networks of the human gut symbiont Bacteroides thetaiotaomicron are uncovered using machine learning
    Kim K ,  Choe D ,  Kim SC ,  Yim SS ,  Jeong KJ ,  Palsson B ,  Cho S ,  and  Cho BK
    Submitted, 2025
  2. Directed evolution of CRISPR-Cas spacer acquisition machinery enables noninvasive biological recording and lineage tracing in the mammalian gut
    Yim SS* ,  Wang J ,  Jang H ,  Qu Y ,  Huang Y ,  Huang Y ,  Kaufman A ,  and  Wang HH*
    Submitted, 2025
  3. Engineering modular enzyme assembly: Synthetic interface strategies for natural products biosynthesis applications
    Kim G ,  Lee D ,  Kim JH ,  Kim SD ,  Kim H ,  Kim JH ,  Yim SS ,  Yeom SJ ,  Keasling JD ,  and  Cho BK
    Natural Product Reports, 2025
    PDF

2024

  1. Toward DNA-based recording of biological processes
    Jang H ,  and  Yim SS*
    International Journal of Molecular Sciences, 2024
    PDF
  2. Emerging methylation-based approaches in microbiome engineering
    Won C ,  and  Yim SS*
    Biotechnology for Biofuels and Bioproducts, 2024
    PDF

2023

  1. Rapid combinatorial rewiring of metabolic networks for enhanced poly(3-hydroxybutyrate) production in Corynebacterium glutamicum
    Yim SS ,  Choi JW ,  Lee YJ ,  and  Jeong KJ
    Microbial Cell Factories, 2023
    PDF Supp

2021

  1. High-throughput transcriptional characterization of regulatory sequences from bacterial biosynthetic gene clusters
    Park J ,  Yim SS ,  and  Wang HH
    ACS Synthetic Biology, 2021
    PDF Supp
  2. Exploiting interbacterial antagonism for microbiome engineering
    Yim SS ,  and  Wang HH
    Current Opinion in Biomedical Engineering, 2021
    PDF
  3. Robust direct digital-to-biological data storage in living cells
    Yim SS ,  McBee RM ,  Song AM ,  Huang Y ,  Sheth RU ,  and  Wang HH
    Nature Chemical Biology, 2021
    PDF Supp

2020

  1. Protecting linear DNA templates in cell-free expression systems from diverse bacteria
    Yim SS ,  Johns NI ,  Noireaux V ,  and  Wang HH
    ACS Synthetic Biology, 2020
    PDF Supp

2019

  1. Metabolic engineering of Corynebacterium glutamicum for high-level ectoine production - design, combinatorial assembly, and implementation of a transcriptionally balanced heterologous ectoine pathway
    Gießelmann G ,  Dietrich D ,  Jungmann L ,  Kohlstedt M ,  Jeon EJ ,  Yim SS ,  Sommer F ,  Zimmer D ,  Mühlhaus T ,  Schroda M ,  Jeong KJ ,  Becker J ,  and  Wittmann C
    Biotechnology Journal, 2019
    PDF Supp
  2. Multiplex transcriptional characterizations across diverse bacterial species using cell-free systems
    Yim SS+ ,  Johns NI+ ,  Park J ,  Gomes ALC ,  McBee RM ,  Richardson M ,  Ronda C ,  Chen SP ,  Garenne D ,  Noireaux V ,  and  Wang HH
    Molecular Systems Biology, 2019
    PDF Supp

2018

  1. Metagenomic mining of regulatory elements enables programmable species-selective gene expression
    Johns NI+ ,  Gomes ALC+ ,  Yim SS ,  Yang A ,  Blazejewski T ,  Smillie CS ,  Smith MB ,  Alm EJ ,  Kosuri S ,  and  Wang HH
    Nature Methods, 2018
    PDF Supp
  2. Development of a potential protein display platform in Corynebacterium glutamicum using mycolic acid layer protein, NCgl1337, as an anchoring motif
    Choi JW ,  Yim SS ,  and  Jeong KJ
    Biotechnology Journal, 2018
    PDF Supp
  3. Development of a high-copy-number plasmid via adaptive laboratory evolution of Corynebacterium glutamicum
    Choi JW ,  Yim SS ,  and  Jeong KJ
    Applied Microbiology and Biotechnology, 2018
    PDF Supp

2017

  1. Multiplex recording of cellular events over time on CRISPR biological tape
    Sheth RU ,  Yim SS ,  Wu FL ,  and  Wang HH
    Science, 2017
    PDF Supp
  2. Engineering of Corynebacterium glutamicum for consolidated conversion of hemicellulosic biomass into xylonic acid
    Yim SS+ ,  Choi JW+ ,  Lee SH ,  Jeon EJ ,  Chung WJ ,  and  Jeong KJ
    Biotechnology Journal, 2017
    PDF Supp

2016

  1. Enhanced secretion of recombinant proteins via signal recognition particle dependent pathway by deletion of rrsE in Escherichia coli
    Lee YJ ,  Lee RJ ,  Lee SH ,  Yim SS ,  and  Jeong KJ
    Biotechnology and Bioengineering, 2016
    PDF Supp
  2. Development of a potential stationary-phase specific gene expression system by engineering of SigB-dependent cg3141 promoter in Corynebacterium glutamicum
    Kim MJ ,  Yim SS ,  Choi JW ,  and  Jeong KJ
    Applied Microbiology and Biotechnology, 2016
    PDF Supp
  3. Modular optimization of hemicellulose-utilizing pathway in Corynebacterium glutamicum for consolidated bioprocessing of hemicellulosic biomass
    Yim SS ,  Choi JW ,  Lee SH ,  and  Jeong KJ
    ACS Synthetic Biology, 2016
    PDF Supp
  4. Development of high-affinity single chain Fv against Foot-and-Mouth Disease virus
    Jung JG ,  Jeong GM ,  Yim SS ,  and  Jeong KJ
    Enzyme and Microbial Technology, 2016
    PDF
  5. Development of a new platform for secretory production of recombinant proteins in Corynebacterium glutamicum
    Yim SS ,  Choi JW ,  Lee RJ ,  Lee YJ ,  Lee SH ,  Kim SY ,  and  Jeong KJ
    Biotechnology and Bioengineering, 2016
    PDF Supp

2015

  1. Enhanced production of recombinant proteins with Corynebacterium glutamicum by deletion of insertion sequences (IS elements)
    Choi JW ,  Yim SS ,  Kim MJ ,  and  Jeong KJ
    Microbial Cell Factories, 2015
    PDF Supp
  2. Enhanced production of gamma-aminobutyrate (GABA) in recombinant Corynebacterium glutamicum by expressing glutamate decarboxylase active in expanded pH range
    Choi JW ,  Yim SS ,  Lee SH ,  Kang TJ ,  Park SJ ,  and  Jeong KJ
    Microbial Cell Factories, 2015
    PDF

2014

  1. Rapid isolation of antibody from a synthetic human antibody library by repeated fluorescence-activated cell sorting (FACS)
    Yim SS ,  Bang HB ,  Kim YH ,  Lee YJ ,  Jeong GM ,  and  Jeong KJ
    PLoS One, 2014
    PDF
  2. Systemically programmed adaptive evolution revealed the potential role of carbon and nitrogen pathways during lipid accumulation in Chlamydomonas reinhardtii
    Velmurugan N ,  Sung M ,  Yim SS ,  Park MS ,  Yang JW ,  and  Jeong KJ
    Biotechnology for Biofuels, 2014
    PDF Supp
  3. Study of cellular development and intracellular lipid bodies accumulation in the thraustochytrid Aurantiochytrium sp. KRS101
    Velmurugan N ,  Sathishkumar Y ,  Yim SS ,  Lee YJ ,  Park MS ,  Yang JW ,  and  Jeong KJ
    Bioresource Technology, 2014
    PDF Supp
  4. High-level secretory production of recombinant single chain variable fragment (scFv) in Corynebacterium glutamicum
    Yim SS ,  An SJ ,  Choi JW ,  Ryu AJ ,  and  Jeong KJ
    Applied Microbiology and Biotechnology, 2014
    PDF

2013

  1. Surface display of recombinant proteins on Escherichia coli by BclA exosporium of Bacillus anthracis
    Park TJ ,  Heo NS ,  Yim SS ,  Park JH ,  Jeong KJ ,  and  Lee SY
    Microbial Cell Factories, 2013
    PDF Supp
  2. Quantified high-throughput screening of Escherichia coli producing poly(3-hydrobutyrate) based on FACS
    Lee JH ,  Lee SH ,  Yim SS ,  Kang KH ,  Lee SY ,  Park SJ ,  and  Jeong KJ
    Applied Biochemistry and Biotechnology, 2013
    PDF Supp
  3. Isolation of fully synthetic promoters for high-level gene expression in Corynebacterium glutamicum
    Yim SS ,  An SJ ,  Kang M ,  Lee J ,  and  Jeong KJ
    Biotechnology and Bioengineering, 2013
    PDF Supp
  4. Isolation of a potential anchoring motif based on proteome analysis of Escherichia coli and its use for cell surface display
    Yim SS+ ,  An SJ+ ,  Han MJ ,  Choi JW ,  and  Jeong KJ
    Applied Biochemistry and Biotechnology, 2013
    PDF Supp
  5. Development of a secretion system for the production of heterologous proteins in Corynebacterium glutamicum using the porin B signal peptide
    An SJ ,  Yim SS ,  and  Jeong KJ
    Protein Expression and Purification, 2013
    PDF Supp
  6. Evaluation of intracellular lipid bodies in Chlamydomonas reinhardtii strains by flow cytometry
    Velmurugan N ,  Sung M ,  Yim SS ,  Park MS ,  Yang JW ,  and  Jeong KJ
    Bioresource Technology, 2013
    PDF Supp